species:   Rhsol
pid:       PID0611
parent:    Rhi-milR-5
paralog:   
locus:     KB317703.1:887-999
matures:   ['AAGGAAUGGGUUGAAUGCUGCC', 'CAGCAAAGGACCCUAGAACUCCUCAG']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317703.1:887-999

3 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

      *************************                                         *********************                    
ACCCAGGCCAGCAAAGGACCCUAGAACUCCUCAGCCGCAACUAUUGGUGGCCAGGUAUGAAGUUGUCAGCUAAGGAAUGGGUUGAAUGCUGCCCAGUAUGCCAAGCUAACCGU
.....((.(((((...(((((......((((.(((.((((((..(.(((......))).)))))))..))).))))..)))))...))))).))...................
-----------------------------------------------------------------------AAGGAAUGGGUUGAAUGCUGCC-------------------- l=22 a=0 c
--------CAGCAAAGGACCCUAGAACUCCUCAG------------------------------------------------------------------------------- l=26 a=0 c*
--------CAGCAAAGGACCCUAGAACUCCU---------------------------------------------------------------------------------- l=23 a=1 ma
--------------------------------------------------------------------------GAAUGGGUUGAAUGCUGCC-------------------- l=19 a=0 ma*

--------CAGCAAAGGACCCUAGAACUCCU---------------------------------------------------------------------------------- l=23 a=1 (ma)

mb-01011
ax-1001011
ku-01
ss-100110001000
fn-001
